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Book Review: Two More Books about Polar Biomes

The two year celebration of research, discovery, and social studies of the globe’s Polar Regions comes to a close. International Polar Year 2007-2009 ends March 31st. Educators and Research teams from the around the world ramped up efforts to learn as much as we can about the ends of the earth before they are changed forever by climate change.
This will be my final book review dedicated to IPY.

Title: Scary Creatures of the Arctic
Author: Penny Clarke
Publisher: Scholastic

The Arctic is a very cold and windy place, but it is teeming with life. For thousands of years the plants, animals, and people have managed to get what they need from this harsh climate by paying attention to the patterns. Presenting a combination of photographs and illustrations the book shows us arctic landscapes, wildlife, and the people who live on top of the world and how they survive. This is a perfect introductory ecology book about this biome for third-fifth graders.

Title: Ookpik: The Travels of a Snowy Owl
Author: Bruce Hiscock
Publisher: Boyds Mills Press

The author recounts the life and aim to survive of an Ookpik, the Inuit word for snowy owl. This hardy species of owl lives all-year in the Arctic, hunting in open areas and in day light. But if food resources become limited they are known to migrate some seasons. They fly south to Canada and New England. This is the story of an ookpik who spent a winter in the Adirondack Mountains of upper state New York. Much to the delight of bird watchers, that owl spent the winter in a local town and farming community reaping the benefits of abundant mice, voles, hares, and small birds. It is a delightful book with beautiful watercolor illustrations.
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Diversity in Science – Celebrating Women Achievers in Science.

The second installment of the Diversity in Science Carnival has been posted at Thus Spake Zuska. I am very happy so many people continue to participate in the effort. But can you believe it; I failed to write my post in time. However, I have a post-addendum contribution to Women Acheivers of STEM: Past and Present.

Today, I honor Dr. Roger Arliner Young. The name might sound masculine; she was indeed a woman, in fact the first African-American Woman to earn a doctorate in Zoology. While an unlikely undergraduate science student, she was mentored by Ernest Everett Just, a prominent Black zoologist at the turn-of-the-other-century and for anyone familiar with African-American Black Greek lettered organizations, a co-founder of Omega Psi Phi Fraternity, Inc.


Dr. Young’s story is interesting to me because I find myself particularly drawn to historical science leaders with whom I share an academic connection in this case an African-American woman who studied zoology. Her ground-breaking work was with paramecium and cells and in marine ecosystems. She is also the first African-American woman to publish in the journal Science. However, her scientific career was fraught with challenges. Her grades as an undergraduate student were unimpressive, but she was obviously brilliant. Her many mentors, prominent scientists at the time and white men saw past her grades and her life issues – she was caring for an invalid mother and had some mental instabilities. Initially she was enrolled in the doctoral program at the University of Chicago (1929) – the same institution Charles Henry Turner attended. However, she failed her qualifying exams – an important exam in Ph.D. programs. She was embarrassed and disappeared. Years later, she re-surfaced taught at Howard University, her alma mater. However, things began to go sour there, too. She was dismissed from her position in 1937, but this time she turned the tables in her favor. She used the time to try for her Ph.D. again and was successful. She received her degree in 1940 from the University of Pennsylvania.

She continued to research and teach, but moved a lot from institution to institution. Eventually her mental distress got the best of her and was hospitalized. Though she never experienced any big fanfare and success, she is very much a real Woman Achiever and Science Hero of mine. Her life is a personal testimony that hardships are not permanent barriers. That even the most ‘unlikely’ students can sometimes possess impressive scientific minds. Science is staffed by real people, sometimes fragile people who live with their imperfect lives. I realize that my slowly moving dissertation meter and the life issues I confront daily are a part of life but it that doesn’t mean I can’t accomplish my goals. I sometimes feel a little sad for myself because I am the last of my cohort who has yet to graduate. Even students who started years after me have defended and moved away and I am still here. I feel lonely and disappointed. But then I think, yes, I’m still here. I’m sticking it out. Yes, it is taking me longer, much longer, to finish than I or any of my professors intended, but like Roger Arliner Young, I am finishing. And it doesn’t matter it how long it takes. It is her indomitable spirit that I channel today and everyday and I near completion of my dissertation; and when it is complete I will dedicate it to her memory.
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Wordless Wednesdays: Mole Hills

Here is a sure sign of subtarrean life - soft mounds of dirt and mud means none other than moles!






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Book Review: Ice Bears

International Polar Year is drawing to a close and I am still commemorating the occasion with posts dedicated to polar ecology.


Title: Ice Bears
Author: Brenda Z. Guiberson
Illustrator: Ilya Spirin
Publisher: Henry Holt and Company

So far, this book is my early favorite for the Outstanding Children’s Book Award in Animal Behavior for this year. The author accurately describes the behavior of polar bears, focusing on a mother-twin cubs unit. The illustrations supplement the narratives. I especially like how the author uses onomatopoeia to describe some of the animal behavior like nursing and vocalizations between mother cubs. Because of the endangered nature of this species, the book serves as a perfect example of how the fields of animal behavior, ecology, and conservation blend together to help us understand how species interact with each and their environment. And be sure to check out the Arctic Ice Report following the story proper. It summarizes the state of the polar bear and other polar animals to climate conditions of the arctic region. Ice is an important environmental condition that North Pole animals like the polar bear, seals, caribou, fish, and foxes require. The need each other and they all need the ice to survive.

It’s not too late to make your voice heard. Sign the Center for Biological Diversity’s petition to save the polar bear and bring awareness of the need to protect the habitat of other polar wildlife.
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The cosmic "dark ages"

In brief, "dark ages" refers to the period after recombination occurred, about 380,000 years after the big bang, creating the cosmic microwave background (CMB), up to and partly including the time that the first stars had formed, perhaps as early as four hundred million years later, and caused the reionization of much of the neutral hydrogen in the universe.

That's a mouthful, but it's important to understand in order to have a useful discussion of the conditions that existed when the first stars and first galaxies in the universe formed. Many important open questions in astrophysics right now have to do with the nature of these events. Since I expect to discuss some of these questions, it's necessary to say some things about the "dark ages". That's what this note is about.

Let's start with the CMB. I'm going to give just a sketch. You might want to consult other references if you need more detail.

The period of time in which the CMB emerged is also known as the period of recombination. This was not an instantaneous process, but it did proceed relatively quickly, and is often thought of as a single event.

Basically, before recombination matter (mostly hydrogen and helium) and energy (light, i. e. photons) existed in thermal equilibrium. That is, the following reaction could occur with equal probability in either direction:
H + γ ⇄ p + e-

Here, H stands for a hydrogen atom (with one electron), γ is a photon, p is a proton, and e- is an electron. (We'll ignore helium, for simplicity.) What this formula says is that a photon of sufficient energy could dislodge an electron from a hydrogen atom to form a proton and a free electron, and with equal probability protons and free electrons could combine to form a hydrogen atom and a photon.

As the universe cooled after the big bang, the average temperature of the matter-energy plasma steadily dropped. Before the period of recombination, hydrogen atoms could exist, but not for very long, because most photons had enough energy to completely dislodge an electron, so the reaction went from left to right as often as from right to left.

Over a period of time lasting a few tens of thousands of years the situation changed so that most photons no longer had enough energy to dislodge an electron. (A low energy photon could still interact or "scatter" with a hydrogen atom by raising an electron to a higher energy level, but we can gloss over that detail.) Note that the average or "typical" photon energy may be a lot lower than what's needed to dislodge an electron, as long as there are still enough higher-energy photons around. This is a statistical situation governed by the Maxwell-Boltzmann equation, but all that really matters is that eventually photons and neutral hydrogen atoms "decouple" statistically.

So at some point you have recombination, when electrons combine with protons to make neutral hydrogen, and the process (mostly) doesn't reverse. Occasionally, a photon and a hydrogen atom may still interact, but as the universe expands, it's increasingly less likely for a photon and an atom to come close enough to interact, until the probability of interaction is essentially zero. This second stage is sometimes referred to as "decoupling" of matter and photons.

Thus the period of "dark ages" began right after the relatively brief process of recombination and decoupling. For simplicity, we date this point to a single time when the process was about half complete, roughly 380,000 years after the big bang.

This period is termed "dark", even though there were plenty of photons around, because there were as yet no stars or other compact sources of illumination. (There's another reasons for calling it "dark", which we'll get to in a moment.)

CMB photons have a nearly perfect black-body distribution. There is a clear peak of maximum energy in this distribution. What we observe is that this peak occurs at about 2 mm, in the microwave part of the spectrum. But the time of decoupling, 380,000 years after the big bang, corresponds to a redshift of z≈1100, so at the time of decoupling the peak photon energy was around a wavelength of just 2.2 μm (2200 nm) in the infrared part of the electromagnetic spectrum. (If you need to refresh your memory about how redshift works, check here.) So "dark" is not exactly the right term to use, but compared to abundant light from stars, it's not unreasonable.

After the time of recombination/decoupling, most hydrogen and helium atoms were neutral and un-ionized. This went on for several hundred million years. One of the most interesting open questions is about determining more exactly how long this lasted. We can reasonably guess what probably brought the dark ages to an end: formation of the first stars in the universe. But we don't have a good idea of just when this started, or how long the process took.

In this period, matter was beginning slowly to come together in higher-density clumps under the force of gravity. Dark matter, which outweighed ordinary matter then (as now), by a ratio of about 5.5:1 speeded up this process.

It was precisely this formation of regions of higher matter density that enabled the first stars to form. But because of this same higher density of matter around newborn stars, the abundant high-energy photons produced by these stars were again likely to interact with the nearby un-ionized matter, which scattered them and reduced their energy – dimming the light of these first stars.

One of the large uncertainties concerns the characteristics of this first generation of stars. We have no direct evidence about them. What we think we know about them is based on theoretical models rather than direct observation. (We discussed formation of the first stars back here.) However, it's widely believed that these stars were unlike stars formed later, right up to the present time. The first stars were probably quite large (maybe as much as 200 solar masses), very hot, and very bright. Because they burned their fuel so rapidly, their lifetimes would be very short, perhaps less than a million years.

Some of the light from extremely hot, massive stars such as those of the first generation is well into the ultraviolet part of the spectrum, around 90 nm. Such photons have an energy above 13.6 eV (91.2 nm wavelength), enough to completely ionize hydrogen. If these stars formed, say, 400 million years after the big bang, at a redshift of z≈11, the wavelength of their light would be shifted to the area beyond 1100 nm, which is in the infrared. That's beyond the range of human eyes, or most astronomical instruments. Consequently, we would have a very hard time detecting light from the first stars, even if they weren't so far away (over 13 billion light-years) and obscured by clouds of atomic hydrogen. That time period would still seem "dark" to us – there would be very little we could "see".

However, the first stars radiated so much energy, especially at ultraviolet wavelengths, that over time they effectively reionized all of the hydrogen in their vicinity. And this is (probably) what brought about the epoch of reionization in the universe, effectively ending the "dark ages".

The first stars were probably not part of galaxies, though we don't know for sure. If that's the case, they would be even harder to observe. The first objects we will be able to detect from this period almost certainly will be galaxies or quasars (which are galaxies with a very active central black hole). So the question of when galaxies began to form is separate, but equally puzzling. There is evidence that the first galaxies in fact did form before the end of the dark ages – because we can actually observe a few that show evidence of un-ionized hydrogen.

What we can say for sure is that the first stars must have consisted only of the primordial elements hydrogen and helium, since heavier elements (except for a small trace of lithium) formed and dispersed only when the first stars exploded as supernovae. But that did happen rather quickly, since the first stars were very luminous, and consequently had very brief lives.

As noted, we aren't very sure about when this first generation of stars appeared, because we can't yet observe them directly. But we do have some evidence concerning the epoch of reionization, and hence we have some idea of when it ended.

One kind of evidence involves studying the spectra of some of the most distant objects we are currently able to observe – quasars. We have detected a number of quasars at redshifts between 6 and 7. This range represents a time period from about 780 to 950 million years after the big bang.

There are absorption lines in the spectra of these quasars, and they tell us not only about the redshift, but give other information as well. Among the most important lines are those due to hydrogen that's not fully ionized, such as lines of the Lyman series. For the most part these lines are due to hydrogen in the vicinity of the source, in which case the lines are quite sharp and distinct.

But suppose there is a substantial amount of incompletely ionized hydrogen between us and the source. If this gas is at a distance sufficiently less (in terms of redshift), the absorption lines will be fuzzy instead of sharp. This effect is called a Gunn-Peterson trough.

In 2001 a quasar was identified at z=6.28, which showed a Gunn-Peterson trough, while other quasars with z≤6 did not. This suggests that reionization was mostly complete by 950 million years after the big bang, but not by 900 million years. [1][2]

Quasars, by themselves, are a possible contributor to reionization, in addition to the earliest stars. Quasars certainly produce enough high-energy photons. However, the question is whether there were enough quasars in existence during the epoch of reionization to account for the effect. Since only the very brightest quasars can currently be observed at that distance (z≥6), it's not possible to reliably estimate how many quasars altogether were around then. Rough estimates suggest there weren't enough.

There is another source of evidence for reionization, one very different from the Gunn-Peterson trough. This involves a very detailed study of anisotropies (irregularities at small angular scales) in the CMB. The CMB has many anisotropies due to conditions existing from the earliest moments after the big bang. However, if reionization occurred, certain kinds of additional characteristic anisotropies will also be present. These result from polarization of CMB light due to Thomson scattering of photons by free electrons (if such exist in sufficient numbers). Since free electrons are a by-product of reionization, they provide a very good marker, if they can be detected.

Unfortunately, the earliest data analysis (in 2003) from the Wilkinson Microwave Anisotropy Probe suggested that reionization occurred in the range 11<z<30, which corresponds to a mere 100 million to 420 million years after the big bang. This is not compatible with the quasar evidence. It's also rather implausible at the high z end, if reionization was caused by the first stars.

Fortunately, however, later data analysis (released in 2008) restated the range for reionization to 7≤z≤11. [3] z=7 still doesn't quite mesh with the quasar data, but it's pretty close. z=11 corresponds to 420 million years after the big bang, which is quite plausible for appearance of the first stars. Note that if this range is correct, then the reionization process took a lot of time, maybe 400 to 500 million years. First generation stars almost certainly weren't around that long. Such stars have very short lifetimes, and new stars of this kind can't form, because the gas from which they could form would contain considerable amounts of elements heavier than helium, precluding the formation of more stars like those of the first generation.

A third possible source of evidence comes from surveys looking for very faint, high-redshift galaxies (not quasars). Some objects have been found up to z=7.5 – about 710 million years after the big bang. [4] What isn't clear is whether these objects were either abundant enough or had hot enough stars to contribute significantly to reionization. But when the James Webb Space Telescope goes to work, sometime after mid-2013, we should be able to find many more early galaxies. The planned upgrade to the Hubble Space Telescope this year would also help – if it occurs.

Further reading:

[1] Evidence for Reionization at z ~ 6: Detection of a Gunn-Peterson Trough in a z = 6.28 Quasar – 2001 research article on first evidence for reionization (open access)

[2] First Light: Astronomers Use Distant Quasar To Probe Cosmic "Dark Age," Universe Origins (8/8/01) – press release describing the preceding research

[3] A New Day in Precision Cosmology (3/11/08) – news article describing analysis of WMAP data, including information on reionization

[4] Largest Sample Of Very Distant Galaxies Ever Seen Provide New Insights Into Early Universe (7/24/08) – press release

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Wordless Wednesday: St. Patrick's Day

Clover grass
And don't forget that today is International Polar Day celebrating Polar Oceans.
Here are some links to some stories from the National Science Foundation about the polar regions.
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Propagandists and marketers agree: emotions may be more reliable when making choices

Here's yet another "study" that purports to show "gut reactions" are "better" than logical analysis in decision making. (Recent discussions of this are here, here, here.)

It's about how sales and marketing people and propagandists have learned to take advantage of your emotions for their own benefit.

Of course, that's not how it's presented....

Note the bait-and-switch technique going on in the research report: "reliability" is what the study seems to promise, but the fine print says that what you actually get is consistency.

Admittedly, "reliability" and "consistency" are nearly synonymous in terms of outcomes that marketing people want. But they may not be synonymous at all in terms of what decision-makers (i. e. you) want.

Trust Your Heart: Emotions May Be More Reliable When Making Choices (2/23/09)
"We investigated the following question: To what extent does relying on one's feelings versus deliberative thinking affect the consistency of one's preferences?" write the authors. To get at the question, the authors designed experiments where participants studied and chose among 8-10 products, sometimes relying upon their emotional reactions and sometimes calling upon cognitive skills. Their conclusion: "Emotional processing leads to greater preference consistency than cognitive processing."


Beware of marketing people who presume to advise you about, well, almost anything. But especially about either research conclusions or products they want to sell you.

Note the basic – and rather flagrantly expressed – dishonesty.

On one hand, the objective summary that the researchers offer of their study is: "Emotional processing leads to greater preference consistency than cognitive processing." In other words, the benefit attributed to reliance on emotion for decision making is consistency.

This isn't all that surprising: when people just go with their "gut feelings", the result is more likely to be the same each time the same decision is presented than if the actual specifics of the situation, which may vary from case to case, are analyzed.

This is also the outcome that marketers naturally prefer: predictable, consistent responses to marketing pitches.

But on the other hand, and this is the dishonest part, the authors also write "Indeed, our results suggest that the heart can very well serve as a more reliable compass to greater long-term happiness than pure reason."

This is a specious claim: where in their study did the researchers actually measure the happiness that experimental subjects experience as a result of their choices, as opposed to the consistency of the choices?

In other words, the unspoken idea they're pushing is actually this: you will enjoy more happiness if you allow your decisions to be determined according to how marketing has manipulated your emotions. (E. g.: Just go ask your doc for that Viagra prescription and have more fun in bed! And don't worry about whether your real problem in bed is something Viagra doesn't fix.)

If you think there may be some logic to that, just ask yourself whether letting yourself be manipulated by the greed of others is a good path to your happiness.

The sad truth of human behavior, despite illusions that humans are "rational" creatures, is that emotions are quite often much stronger motivators than reason. And they are generally a lot easier to control and manipulate than rational thinking about facts and logic.

As a result of that, people who stand to profit or otherwise benefit from the actions or beliefs they are able to persuade others to embrace have made a concerted effort, first of all, to persuade people that decisions are best made on an emotional basis.

What's their alternative, if facts and logic do not support whatever such people are advocating? They can always simply lie or engage in misdirection, and that's often done too, of course. But lies can occasionally be exposed, and in extreme cases can even be subject to prosecution (for fraud).

Think I'm making all this up? I suggest reading about one of the masters of propaganda techniques in the 20th century: Edward Bernays. He was a nephew of Sigmund Freud, and literally wrote the book: Propaganda.

Here's how that book begins:
The conscious and intelligent manipulation of the organized habits and opinions of the masses is an important element in democratic society. Those who manipulate this unseen mechanism of society constitute an invisible government which is the true ruling power of our country… We are governed, our minds molded, our tastes formed, our ideas suggested, largely by men we have never heard of. This is a logical result of the way in which our democratic society is organized…

I'll try to summarize some of the history and thinking of Bernays when time permits, but here are some things to read for now, if you're interested:

Stunt Man – book review of a biography on Bernays

Karl Rove & the Spectre of Freud’s Nephew – an essay on Bernays by Stephen Bender

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