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Book Review - Ecology and World Biomes

As a member of the Animal Behavior Society's Children Book Award Committee I get to review dozens of children's books each year. This year I had the pleasure of reviewin a phenonmenal series about Biomes. It is a perfect primer to ecology. Each book describes physical environment, features the plant, animal, and bug life of each biome, and introduces young readers, grades 1-3, to key vocabulary terms. Each book is very easy to read, 25 pages, and the photographs of animals and landscapes are breath taking.

The Series is produced by Scholastic News Nonfiction Readers.

A Home on the Tundra by Katie Marsico










A Home on the Savanna by Susan Labella










A Home in the Swamp by David C. Lion












A Home on the Prairie by David C. Lion










A Home in the Rain Forest by Christine Taylor-Butler










A Home in the Coral Reef by Christine Taylor-Butler


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Polar Bears and Climate Change


International Polar Year is scientific celebration and research program that celebrates the unique ecosystems and habitats of the North and South Poles. It is also an educational campaign to document these biomes before they are no more. Climate change and global warming are threatening EVERYTHING we know to be real in the world. Losing a biome is a travesty -- it would mean loss of innocent life, the compromised ability for people and animals to feed and shelter ourselves, and the complete altering our our weather and season patterns which impacts our agriculuture and ways of living.

Right now, polar bears, the top predator of the northern polar region is seriously threatened with extinction. The World Wildlife Federation has a new TV campaign to make people aware of how climate change is affecting polar bears and other animals. Polar bears are at risk of extinction due to melting and thinning arctic ice, and could disappear by the end of this century if we don't take action. Can you imagine how awful that would be.
Actor and WWF supporter Noah Wyle generously donated his time to record this important message about polar bears at risk. Watch this two-minute video right now.

Help me in sharing this message and working to make our world a place were NO animal dies from the face of the earth in our or our children's lifetimes.
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Proton-electron mass ratio

Physicists speculate a lot about whether (or to what extent) the laws of nature are exactly the same in all parts of the visible universe. This question is sometimes known as the "fundamental constants" problem.

There are a variety of such fundamental constants. The best known is the speed of light. Many theories that are part of "alternative physics" are based on the idea that the speed of light (in a vacuum) is not a constant, and may have been different early in the history of the universe. There is very little, if any, solid evidence for this, however.

A closely related constant is the fine structure constant, fondly known as alpha. It is related to the speed of light by the equation α = e2(2ℎcε0)-1, where e is the charge of an electron, ℎ is the Planck constant, c is the speed of light, and ε0 is the permittivity of free space.

There have been attempts to determine from astronomical data whether α may vary with time. This question can be investigated since α affects atomic spectra that are easily measured in a laboratory on Earth, and which can also be observed in distant astronomical objects. So far, no evidence of variability has been found. (See here, from June 2007.)

If α doesn't change with time, it is very unlikely that the speed of light does either (unless other constants also change in just the right way).

Another important fundamental constant is the ratio of the mass of a proton to the mass of an electron. (This ratio is sometimes denoted by μ, but that's confusing, as μ is used for other quantities in physics also.) In the standard model of particle physics, these masses, and their ratio, are free parameters that are not determined by the model itself. They are just there.

This ratio also affects atomic spectra, so it can also be investigated in astronomical studies. In April 2006, some evidence was reported for a difference between the laboratory value of the ratio and its value in distant quasars. The difference claimed was very small – 0.002% over a time span of 12 billion years. (See here, here.)

However, now there is more recent evidence from halfway across the universe, indicating that the ratio long ago is the same as it is now, although the time span is somewhat less (6 billion years):

Earth's laws still apply in distant Universe (6/19/08)
The laws of nature are the same in the distant Universe as they are here on Earth, according to new research conducted by an international team of astronomers, including Christian Henkel from the Max Planck Institute for Radio Astronomy (MPIfR) in Bonn. Their research, published today in Science, shows that one of the most important numbers in physics theory, the proton-electron mass ratio, is almost exactly the same in a galaxy 6 billion light years away as it is in Earth's laboratories - approximately 1836.15.

According to Michael Murphy, Swinburne astrophysicist and lead author of the study, it is an important finding, as many scientists debate whether the laws of nature may change at different times and in different places in the Universe. "We have been able to show that the laws of physics are the same in this galaxy half way across the visible Universe as they are here on Earth," he said.

The light actually comes from a quasar 7.5 billion light years away. But the spectral effect is due to ammonia molecules encountered when the light passes through a galaxy that is 6 billion light years distant.

Another account emphasizes that the latest result gives a constraint 10 times better than the 2006 result:

Changing physical constant may be constant after all (6/20/08)
There is good reason to trust the new result, Murphy says. The wavelengths at which the ammonia molecules absorb radiation depend more strongly on the proton-to-electron mass ratio than with other molecules, such as the molecular hydrogen that was used for the 2006 result. "Our constraint is 10 times better than those previously obtained," Murphy says.

Wim Ubachs, who led the 2006 analysis, agrees Murphy's result is "solid", but thinks there still might be a way to reconcile the two results. There remains the possibility that the constant varied between 6 billion and 12 billion years ago but has not varied since, he says.

Other accounts of this result:


Further reading:

Strong Limit on a Variable Proton-to-Electron Mass Ratio from Molecules in the Distant Universe – 6/20/08 research article in Science

Ammonia: Proton-electron mass ratio constant for 6 gigayears – 7/14/08 blog post on the research, and reasons why no variation in the ratio should be expected

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P53 and skin pigmentation

Since we just mentioned skin coloration (here, in passing), and we have previously discussed how the p53 protein is involved with it (here), it's interesting that there is now more news on the subject.

Protein Linked To Bone Marrow Failure In Humans Found Through Study Of Dark-skinned Mice (7/20/08)
McGowan, Barsh, and their colleagues found that skin from the feet of the mutant mice exhibited elevated levels of p53. This elevation, or "activation," of p53 stimulated the production of a protein called Kit ligand that stimulates the growth of pigment cells, which turned the mice's skin darker than normal. In contrast, mutant mice unable to express p53 had normal levels of Kit ligand. They also had light-colored feet and unaffected numbers of red blood cells. ...

The researchers hypothesize that increased activation of p53 affects different types of cells in the body in different ways. In skin cells, it increases the amount of Kit ligand and causes darker skin, whereas in bone marrow cells it causes anemia by causing the death of red blood cell precursors.

Is there some lesson in this? Well, p53 is generally regarded as a "good" protein, because it helps ward off cancer that would otherwise result from DNA damage. But it does this by promoting apoptosis of cells affected by the DNA mutation. Anemia is the result when too many red blood cells die.

And the skin darkening? Earlier studies indicate that is also a side effect of increased levels of p53. Such unexpected – and not always desirable – side effects are the reason that developing drugs to treat disease is so difficult. There is so much unexpected interconnection of our cellular machinery, adjusting something in one place can lead to problems in quite different places.

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Blue eyes

The question of eye color seems to interest quite a few people. Previous discussions (here, here) have been among the most popular.

The actual genetics behind eye color remained somewhat obscure until February of this year. Although it's no longer new news, the findings are worth mentioning.

Humans certainly aren't the only animals having variable eye color. But the surprising thing is that (according to the primary author of the new research), until just a few thousand years ago, blue-eyed humans would have been very rare, at best.

Blue-eyed Humans Have A Single, Common Ancestor (1/30/08)
New research shows that people with blue eyes have a single, common ancestor. A team at the University of Copenhagen have tracked down a genetic mutation which took place 6-10,000 years ago and is the cause of the eye colour of all blue-eyed humans alive on the planet today.

“Originally, we all had brown eyes”, said Professor Eiberg from the Department of Cellular and Molecular Medicine. “But a genetic mutation affecting the OCA2 gene in our chromosomes resulted in the creation of a “switch”, which literally “turned off” the ability to produce brown eyes”. The OCA2 gene codes for the so-called P protein, which is involved in the production of melanin, the pigment that gives colour to our hair, eyes and skin. The “switch”, which is located in the gene adjacent to OCA2 does not, however, turn off the gene entirely, but rather limits its action to reducing the production of melanin in the iris – effectively “diluting” brown eyes to blue.

Note what this is saying. It is melanin that produces brown eyes, and melanin production is controlled by the OCA2 gene. A person in whom melanin isn't produced because both copies of OCA2 are faulty will not only not have brown eyes, but will not have brown color anywhere in the skin. However, if there is a certain mutation in both copies of a gene (known as HERC2) adjacent to OCA2 – not in OCA2 itself, as some accounts incorrectly state – production of melanin due to OCA2 will be reduced enough to produce blue eyes, while in skin there is still enough melanin produced to allow some brown coloration.

The reasoning that all people who now have blue eyes descended from a single individual who lived 6-10,000 years ago is based on different evidence, but it's a little more speculative. Another account outlines the argument:

Don't It Make Your Brown Eyes Blue? (2/1/08)
[B]y comparing people with brown or blue eyes, including people from Jordan and Turkey, the researchers were able to pinpoint the exact mutation. It wasn't on the OCA gene but rather on a nearby gene called HERC2. ...

Because blue eye color is found almost exclusively in people of European descent, Eiberg's team speculates that the mutation traces back to the Neolithic expansion, when people in the Black Sea region migrated to northern Europe 6000 to 10,000 years ago.

Two other studies, both appearing in this month's issue of The American Journal of Human Genetics, examined blue eyes in different populations and found the same mutation. The researchers also suggested a common ancestor for all blue-eyed individuals. These teams, however, did not estimate an age for the mutation. Geneticist Richard Sturm of the University of Queensland in Brisbane, Australia, an author of one of the papers says that someday scientists may find additional mutations that cause blue eyes but for now, the signs point to a single change.


Further reading:

One Common Ancestor Behind Blue Eyes – 1/31/08 article at LiveScience

The Family Tree of Blue-Eyed Individuals (2/6/08) – blog article that gives a bit more of the genetic details

Blue eyed people have a single, common ancestor (2/3/08) – another article, which gets some of the details wrong

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Nominate this Blog for the 2008 Black Weblog Award!


The 2008 Black Weblog Award Nomination Process is now open until August 16, 2008. There are 30 categories and one is The Best Science/Technology Blog! I would REALLY appreciate it if you would nominate my Blog - Urban Science Adventures! © for the best science/tech category. I can't nominate myself, so it's all up to you and your friends.


If you are not an avid blog reader, I would certainly encourage you to check out some blogs. Check out this Black blog aggregator: http://rsspect.org/ to discover some great blogs. But I warn you it’s like going down a rabbit hole.
Be sure to nominate this blog for:


The Rules: http://www.blackweblogawards.com/rules/


The Categories: http://www.blackweblogawards.com/categories/


Nomination Form: http://www.blackweblogawards.com/database/step1.phpyou can get started right from there.


Other Blogs I like and I will nominate are:
Best Culture Blog
This category is for blogs which talk about Black culture and/or the African diaspora in a multifaceted and dynamic way.
http://electronicvillage.blogspot.com/


Best Group Blog
This category is for a single blog which is updated by a group of people (two or more people). This blog can be about any topic. Posts must indicate who the author is for each one; it cannot be one person masquerading as different people (for judging purposes).
Young Black Professional Guide http://ybpguide.com/


Best Humor Blog
This category is for humor blogs or blogs which feature humorous content.
Writeback.com http://writeblack.com/


Best International Blog
This category is for blogs of any topic that are based in countries other than the United States. The country of origin for the blog must be clearly identified (for judging purposes).
David McQueen http://davespeaks.wordpress.com/


Best Photo Blog
This category is for blogs which feature the blog author’s photographs. A majority of the content (over 90%) must be photos taken by the author. No Getty Images snatching, please.
The People Could Fly http://thepeoplecouldfly.blogspot.com/


Best Podcast
This category highlights podcasts—serialized audio files available to download—on any topic. Podcasts must be available for download (mp3 format); no strict Flash audio sites unless there’s an option for downloading the shows (for judging purposes).
Delta SEE Radio http://www.deltasee.org/radio/index.htm


Best Video Blog
This category highlights blogs which feature original video content by the blog’s author on any topic. Blog content must be primarily video content (at least 90% of posts, for judging purposes). We are not looking for blogs with Youtube clips of music videos -- this must all be original content by the author.
People Could Fly http://thepeoplecouldfly.blogspot.com/


Best Writing in a Blog
This category is for blogs which have exceptional writing. This category is judged not on a single post basis, but on the overall posts of the blog.
The Black Snob http://blacksnob.com/


Blog to Watch
This category highlights the best “undiscovered” blog in the blogosphere; keep your eye on this one! This is for that great blog that not everyone knows about…but should!
Science To Life http://scienceblogs.com/sciencetolife/

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Chicago Wilderness - Urban Ecology on a Grand Scale


I was wishing I could attend the annual Ecological Society of America conference this morning. I felt really bad when I learned there would be a special session on Studying Chicago Wilderness: An Urban Conservation Model as a Regional Interdisciplinary Laboratory.

Come to find out Chicago Wilderness is an organization - a 12-year-old consortium of 225 member organizations working together with the common mission of conserving the biodiversity of the Chicago metropolitan region. Chicago Wilderness is a regional nature reserve that includes more than 225,000 acres of protected natural lands. It stretches from southeastern Wisconsin, through northeastern Illinois and into northwestern Indiana.

The protected lands in Chicago Wilderness are forest preserves, state parks, federal lands, county preserves, and privately owned lands. There are also many unprotected natural areas that offer refuge to native wildlife. This is an urban ecology and conservation group – a large one. The coalition works together to develop and implement a comprehensive regional plan for biodiversity conservation which connects multiple landowners, as well as scientific and educational institutions, and engages the region's citizens in ecological restoration and biological monitoring. Wow! Isn’t that exciting?

The session at the conference will cover topics such as historical overview, key projects in conservation planning, education, and progress on developing research agendas in natural and social sciences. I wish I was there.
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